setup doesnt check for sub dirs when writing focusUrl
i.e. var/www/sis/trunk still uses the url focus.dev/trunk, not focus.dev/sis/trunk
To upload designs, you'll need to enable LFS and have an admin enable hashed storage. More information
i.e. var/www/sis/trunk still uses the url focus.dev/trunk, not focus.dev/sis/trunk